| Title: | Gene Expression Datasets for the 'MM2S' Package |
|---|---|
| Description: | Gene Expression datasets for the 'MM2S' package. Contains normalized expression data for Human Medulloblastoma ('GSE37418') as well as Mouse Medulloblastoma models ('GSE36594'). Deena Gendoo et al. (2015) <doi:10.1016/j.ygeno.2015.05.002>. |
| Authors: | Deena M.A. Gendoo <[email protected]>, Benjamin Haibe-Kains <[email protected]> |
| Maintainer: | Benjamin Haibe-Kains <[email protected]> |
| License: | GPL-3 |
| Version: | 1.0.3 |
| Built: | 2024-09-12 19:16:28 UTC |
| Source: | https://github.com/cran/MM2Sdata |
Gene expression for 20 GTML Medulloblastoma mouse samples, normalized using expresso and BrainArray CDFs (see references for details).
PLEASE NOTE: The full processed GSE36594 dataset, which contains 56 samples, can be accessed from the following locations: https://github.com/DGendoo/MM2Sdata http://www.pmgenomics.ca/bhklab/software/mm2s
data(GSE36594Expr)data(GSE36594Expr)
Data and annotations are organized in a ExpressionSet of the package Biobase.
pData |
phenoData containing mouse sample genotype and origin |
exprs |
ExpressionSet with 23783 EntrezIds and 20 samples |
fData |
List of 23783 EntrezIds |
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE36594
Gendoo, D. M., Smirnov, P., Lupien, M. & Haibe-Kains, B. Personalized diagnosis of medulloblastoma subtypes across patients and model systems. Genomics, doi:10.1016/j.ygeno.2015.05.002 (2015)
Manuscript URL: http://www.sciencedirect.com/science/article/pii/S0888754315000774
data(GSE36594Expr) # To install from github, please run the following commands in your R terminal: # library(Biobase) # library(devtools) # install_github(repo="DGendoo/MM2Sdata") # data(GSE36594Expr)data(GSE36594Expr) # To install from github, please run the following commands in your R terminal: # library(Biobase) # library(devtools) # install_github(repo="DGendoo/MM2Sdata") # data(GSE36594Expr)
Gene expression for 10 primary Medulloblastoma human samples, normalized using expresso and BrainArray CDFs (see references for details).
PLEASE NOTE: The full processed GSE37418 dataset, which contains 76 samples, can be accessed from the following locations: https://github.com/DGendoo/MM2Sdata http://www.pmgenomics.ca/bhklab/software/mm2s
data(GSE37418Expr)data(GSE37418Expr)
Data and annotations are organized in a ExpressionSet of the package Biobase.
pData |
phenoData containing human sample MB subgroup (obtained from GEOquery of the GSE37418) |
exprs |
ExpressionSet with 19764 EntrezIds and 10 samples |
fData |
List of 19764 EntrezIds |
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE37418
Gendoo, D. M., Smirnov, P., Lupien, M. & Haibe-Kains, B. Personalized diagnosis of medulloblastoma subtypes across patients and model systems. Genomics, doi:10.1016/j.ygeno.2015.05.002 (2015)
Manuscript URL: http://www.sciencedirect.com/science/article/pii/S0888754315000774
data(GSE37418Expr) # To install from github, please run the following commands in your R terminal: # library(Biobase) # library(devtools) # install_github(repo="DGendoo/MM2Sdata") # data(GSE37418Expr)data(GSE37418Expr) # To install from github, please run the following commands in your R terminal: # library(Biobase) # library(devtools) # install_github(repo="DGendoo/MM2Sdata") # data(GSE37418Expr)