No datasets match
  1. 1.
    consensusOV::GSE14764.eset
    Sample ExpressionSet from MetaGxOvarian
    ExpressionSet
  2. 2.
    CoreGx::clevelandSmall_cSet
    Cleaveland_mut RadioSet subsetted and cast as CoreSet
    CoreSet
  3. 3.
    CoreGx::exampleDataMapper
    Example LongTableDataMapper
    LongTableDataMapper
  4. 4.
    CoreGx::merckLongTable
    Merck Drug Combination Data LongTable
    LongTable
  5. 5.
    CoreGx::nci_TRE_small
    NCI-ALMANAC Drug Combination Data TreatmentResponseExperiment Subset
    TreatmentResponseExperiment
  6. 6.
    CREAM::COREs
  7. 7.
    CREAM::COREs
  8. 8.
    CREAM::COREs
  9. 9.
    CREAM::COREs
  10. 10.
    CREAM::COREs
  11. 11.
    CREAM::COREs
  12. 12.
    CREAM::COREs
  13. 13.
    CREAM::COREs
  14. 14.
    CREAM::COREs
  15. 15.
    CREAM::COREs
  16. 16.
    CREAM::COREs
  17. 17.
    CREAM::COREs
  18. 18.
    CREAM::COREs
  19. 19.
    CREAM::COREs
  20. 20.
    CREAM::COREs
  21. 21.
    CREAM::COREs
  22. 22.
    CREAM::COREs
  23. 23.
    CREAM::COREs
  24. 24.
    CREAM::COREs
  25. 25.
    CREAM::COREs
  26. 26.
    CREAM::COREs
  27. 27.
    CREAM::COREs
  28. 28.
    CREAM::COREs
  29. 29.
    CREAM::COREs
  30. 30.
    CREAM::COREs
  31. 31.
    CREAM::COREs
  32. 32.
    CREAM::COREs
  33. 33.
    CREAM::COREs
  34. 34.
    CREAM::COREs
  35. 35.
    CREAM::COREs
  36. 36.
    CREAM::COREs
  37. 37.
    CREAM::COREs
  38. 38.
    CREAM::COREs
  39. 39.
    CREAM::COREs
  40. 40.
    CREAM::COREs
  41. 41.
    CREAM::COREs
  42. 42.
    CREAM::COREs
  43. 43.
    CREAM::COREs
  44. 44.
    CREAM::COREs
  45. 45.
    CREAM::COREs
  46. 46.
    CREAM::COREs
  47. 47.
    CREAM::COREs
  48. 48.
    CREAM::COREs
  49. 49.
    CREAM::COREs
  50. 50.
    CREAM::COREs
  51. 51.
    CREAM::COREs
  52. 52.
    CREAM::COREs
  53. 53.
    CREAM::COREs
  54. 54.
    CREAM::COREs
  55. 55.
    CREAM::COREs
  56. 56.
    CREAM::COREs
  57. 57.
    CREAM::COREs
  58. 58.
    CREAM::COREs
  59. 59.
    CREAM::COREs
  60. 60.
    CREAM::COREs
  61. 61.
    CREAM::COREs
  62. 62.
    CREAM::COREs
  63. 63.
    CREAM::COREs
  64. 64.
    CREAM::COREs
  65. 65.
    CREAM::COREs
  66. 66.
    CREAM::COREs
  67. 67.
    CREAM::COREs
  68. 68.
    CREAM::COREs
  69. 69.
    CREAM::COREs
  70. 70.
    CREAM::COREs
  71. 71.
    CREAM::COREs
  72. 72.
    CREAM::COREs
  73. 73.
    CREAM::COREs
  74. 74.
    CREAM::COREs
  75. 75.
    CREAM::COREs
  76. 76.
    CREAM::COREs
  77. 77.
    CREAM::COREs
  78. 78.
    CREAM::COREs
  79. 79.
    CREAM::COREs
  80. 80.
    CREAM::COREs
  81. 81.
    CREAM::COREs
  82. 82.
    CREAM::COREs
  83. 83.
    CREAM::COREs
  84. 84.
    CREAM::COREs
  85. 85.
    CREAM::COREs
  86. 86.
    CREAM::COREs
  87. 87.
    CREAM::COREs
  88. 88.
    CREAM::COREs
  89. 89.
    CREAM::COREs
  90. 90.
    CREAM::COREs
  91. 91.
    CREAM::COREs
  92. 92.
    CREAM::COREs
  93. 93.
    CREAM::COREs
  94. 94.
    CREAM::COREs
  95. 95.
    CREAM::COREs
  96. 96.
    CREAM::COREs
  97. 97.
    CREAM::COREs
  98. 98.
    CREAM::COREs
  99. 99.
    CREAM::COREs
  100. 100.
    CREAM::COREs
  101. 101.
    CREAM::COREs
  102. 102.
    CREAM::COREs
  103. 103.
    CREAM::COREs
  104. 104.
    CREAM::COREs
  105. 105.
    CREAM::COREs
  106. 106.
    CREAM::COREs
  107. 107.
    CREAM::COREs
  108. 108.
    CREAM::COREs
  109. 109.
    CREAM::COREs
  110. 110.
    genefu::annot.expos
    Gene expression, annotations and clinical data from the International Genomics Consortium
  111. 111.
    genefu::annot.nkis
    Gene expression, annotations and clinical data from van de Vijver et al. 2002
  112. 112.
    genefu::annot.vdxs
    Gene expression, annotations and clinical data from Wang et al. 2005 and Minn et al 2007
  113. 113.
    genefu::claudinLowData
    claudinLowData for use in the claudinLow classifier. Data generously provided by Aleix Prat.
  114. 114.
    genefu::data.expos
    Gene expression, annotations and clinical data from the International Genomics Consortium
    matrix|353 x 966
  115. 115.
    genefu::data.nkis
    Gene expression, annotations and clinical data from van de Vijver et al. 2002
    matrix|150 x 922
  116. 116.
    genefu::data.vdxs
    Gene expression, annotations and clinical data from Wang et al. 2005 and Minn et al 2007
    matrix|150 x 966
  117. 117.
    genefu::demo.expos
    Gene expression, annotations and clinical data from the International Genomics Consortium
  118. 118.
    genefu::demo.nkis
    Gene expression, annotations and clinical data from van de Vijver et al. 2002
  119. 119.
    genefu::demo.vdxs
    Gene expression, annotations and clinical data from Wang et al. 2005 and Minn et al 2007
  120. 120.
    genefu::mod1
    Gene modules published in Desmedt et al. 2008
  121. 121.
    genefu::mod2
    Gene modules published in Wirapati et al. 2008
  122. 122.
    genefu::modelOvcAngiogenic
    Model used to classify ovarian tumors into Angiogenic and NonAngiogenic subtypes.
  123. 123.
    genefu::pam50
    PAM50 classifier for identification of breast cancer molecular subtypes (Parker et al 2009)
  124. 124.
    genefu::pam50.robust
    PAM50 classifier for identification of breast cancer molecular subtypes (Parker et al 2009)
  125. 125.
    genefu::pam50.scale
    PAM50 classifier for identification of breast cancer molecular subtypes (Parker et al 2009)
  126. 126.
    genefu::scmgene.robust
    Subtype Clustering Model using only ESR1, ERBB2 and AURKA genes for identification of breast cancer molecular subtypes
  127. 127.
    genefu::scmod1.robust
    Subtype Clustering Model using ESR1, ERBB2 and AURKA modules for identification of breast cancer molecular subtypes (Desmedt et al 2008)
  128. 128.
    genefu::scmod2.robust
    Subtype Clustering Model using ESR1, ERBB2 and AURKA modules for identification of breast cancer molecular subtypes (Desmedt et al 2008)
  129. 129.
    genefu::sig.endoPredict
    Signature used to compute the endoPredict signature as published by Filipits et al 2011
  130. 130.
    genefu::sig.gene70
    Signature used to compute the 70 genes prognosis profile (GENE70) as published by van't Veer et al. 2002
  131. 131.
    genefu::sig.gene76
    Signature used to compute the Relapse Score (GENE76) as published in Wang et al. 2005
  132. 132.
    genefu::sig.genius
    Gene Expression progNostic Index Using Subtypes (GENIUS) as published by Haibe-Kains et al. 2010.
  133. 133.
    genefu::sig.ggi
    Gene expression Grade Index (GGI) as published in Sotiriou et al. 2006
  134. 134.
    genefu::sig.oncotypedx
    Signature used to compute the OncotypeDX signature as published by Paik et al 2004
  135. 135.
    genefu::sig.pik3cags
    Gene expression Grade Index (GGI) as published in Sotiriou et al. 2006
  136. 136.
    genefu::sig.tamr13
    Tamoxifen Resistance signature composed of 13 gene clusters (TAMR13) as published by Loi et al. 2008.
  137. 137.
    genefu::sigOvcAngiogenic
    sigOvcAngiogenic dataset
  138. 138.
    genefu::sigOvcCrijns
    sigOvcCrijns dataset
  139. 139.
    genefu::sigOvcSpentzos
    sigOcvSpentzos dataset
  140. 140.
    genefu::sigOvcTCGA
    sigOvcTCGA dataset
  141. 141.
    genefu::sigOvcYoshihara
    sigOvcYoshihara dataset
  142. 142.
    genefu::ssp2003
    SSP2003 classifier for identification of breast cancer molecular subtypes (Sorlie et al 2003)
  143. 143.
    genefu::ssp2003.robust
    SSP2003 classifier for identification of breast cancer molecular subtypes (Sorlie et al 2003)
  144. 144.
    genefu::ssp2003.scale
    SSP2003 classifier for identification of breast cancer molecular subtypes (Sorlie et al 2003)
  145. 145.
    genefu::ssp2006
    SSP2006 classifier for identification of breast cancer molecular subtypes (Hu et al 2006)
  146. 146.
    genefu::ssp2006.robust
    SSP2006 classifier for identification of breast cancer molecular subtypes (Hu et al 2006)
  147. 147.
    genefu::ssp2006.scale
    SSP2006 classifier for identification of breast cancer molecular subtypes (Hu et al 2006)
  148. 148.
    MM2Sdata::GSE36594Expr
    Normalized gene expression data for Mouse MB samples (from GSE36594).
    ExpressionSet
  149. 149.
    MM2Sdata::GSE37418Expr
    Normalized gene expression data for Human MB (GSE37418).
    ExpressionSet
  150. 150.
    mRMRe::cgps.annot
    Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
  151. 151.
    mRMRe::cgps.ge
    Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
    matrix|200 x 1000
  152. 152.
    mRMRe::cgps.ic50
    Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
  153. 153.
    PDATK::birnbaum
    Published classifier gene signature for Birnbaum
  154. 154.
    PDATK::chen
    Published classifier gene signature for Chen
  155. 155.
    PDATK::cohortSubtypeDFs
    A list of sample subtypes for the data in sampleCohortList
  156. 156.
    PDATK::CSPC_MAE
    A 'MultiAssayExperiment' containing cohorts of pancreatic cancer patients, for use in package examples.
    MultiAssayExperiment
  157. 157.
    PDATK::haiderSigScores
    Classifier survival scores for Haider
  158. 158.
    PDATK::sampleClinicalModel
    Sample ClinicalModel Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
    ClinicalModel
  159. 159.
    PDATK::sampleCohortList
    A Set of Example Patient Cohorts
    CohortList
  160. 160.
    PDATK::sampleICGCmicro
    A Sample SurvivalExperiment Containing Data from the ICGC micro-array cohort from 'MetaGxPancreas'
    SurvivalExperiment
  161. 161.
    PDATK::samplePCOSPmodel
    A Sample PCOSP Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
  162. 162.
    PDATK::samplePCOSPpredList
    Sample CohortList with PCOSP Risk Predictions
    CohortList
  163. 163.
    PDATK::samplePCSIsurvExp
    Sample SurvivalExperiment Containing the PCSI rna-sequencing cohort from 'MetaGxPancreas'.
    SurvivalExperiment
  164. 164.
    PDATK::sampleRGAmodel
    Sample RGA Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
    RGAModel
  165. 165.
    PDATK::sampleRLSmodel
    Sample RLS Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
    RLSModel
  166. 166.
    PDATK::sampleTrainedPCOSPmodel
    A Sample Trained PCOSP Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
  167. 167.
    PDATK::sampleValPCOSPmodel
    Sample Validated PCOSP Model for Plotting Examples
  168. 168.
    PharmacoGx::CCLEsmall
    Cancer Cell Line Encyclopedia (CCLE) Example PharmacoSet
    PharmacoSet
  169. 169.
    PharmacoGx::CMAPsmall
    Connectivity Map Example PharmacoSet
    PharmacoSet
  170. 170.
    PharmacoGx::GDSCsmall
    Genomics of Drug Sensitivity in Cancer Example PharmacoSet
    PharmacoSet
  171. 171.
    PharmacoGx::HDAC_genes
    HDAC Gene Signature
  172. 172.
    RadioGx::clevelandSmall
    Cleaveland_mut RadioSet subsetted
    RadioSet
  173. 173.
    survcomp::mainz7g
    Subset of MAINZ dataset containing gene expression, annotations and clinical data.
    ExpressionSet
  174. 174.
    survcomp::nki7g
    Subset of NKI dataset containing gene expression, annotations and clinical data.
    ExpressionSet
  175. 175.
    survcomp::transbig7g
    Subset of the TRANSBIG dataset containing gene expression, annotations and clinical data.
    ExpressionSet
  176. 176.
    survcomp::unt7g
    Subset of UNT dataset containing gene expression, annotations and clinical data.
    ExpressionSet
  177. 177.
    survcomp::upp7g
    Subset of UPP dataset containing gene expression, annotations and clinical data.
    ExpressionSet
  178. 178.
    survcomp::vdx7g
    Subset of VDX dataset containing gene expression, annotations and clinical data.
    ExpressionSet
  179. 179.
    ToxicoGx::HCC_sig
    HCC_sig dataset
  180. 180.
    ToxicoGx::TGGATESsmall
    TGGATESsmall dataset
    ToxicoSet
  181. 181.
    Xeva::brca
    PDXE breast cancer dataset
    XevaSet
  182. 182.
    Xeva::PDXMI
    PDX-MI data
  183. 183.
    Xeva::repdx
    Example PDX dataset
    XevaSet